Andreas-Loibl.de

Studium :: Bioinformatik

Hintergrundbild

Genomik und Bioinformatik

An dieser Stelle findet ihr von mir erstellte Folien, Quellcodes und Projekte für das Modul Genomik und Bioinformatik meines Studiengangs Computational Science an der Uni Regensburg. Selbstverständlich besteht keinerlei Anspruch auf Aktualität, Korrektheit und Vollständigkeit der Veröffentlichungen!

1. Semester

Projekte

Projekt1: Identify languages by text analysis

Report - R code

Projekt2: GC-skew in bacterial genomes

Report - R code

Projekt3: Greedy contig assembly

Report - R code (draft) - C++ code

Übungen

ex11_iterations

Pseudocode - R code

ex12_long_division

Pseudocode - R code

ex15_reverse_compliment

ex19_consecutive_digits

Folien - R code

ex20_walking_the_grid

Folien - R code

ex21_loose_change

Folien - R code

ex24_which_protein_are_you

Folien - R code

ex25_genetic_code_reusage

Bash script - Script Output

ex26_web_hunt

Folien - R code

ex27_open_reading_frame

R code - Script Output

ex30_outlier

R code - Plot - Script Output

ex31_walking_the_grid

Folien - Plot - R code - Script Output

ex32_calculating_correlations

R code - Script Output

ex33_ranked_gene_lists

R code - Script Output

ex38_binary_tree

ex39_walking_trees

Folien - R code - C++ code - Script Output

ex41_building_hash_tables

Folien - R code - C++ code - Script Output

ex43_microarray_processing

Plot - R code - Script Output

ex55_entropy

OpenDocument Spreadsheet - Spreadsheet printed as PDF

ex57_runtimes

R code (with comments)

ex58_viruses_vs_bacteria

Plot - R code - Script Output

ex59_missing_number

R code - Script Output

ex60_sorting

R code - Debug Log - Output (formatted Debug Log)

ex78_the_random_square

ex79_random_circle

ex80_normal_samples

ex81_GT_sites

Plot - R code - Script Output

2. Semester

Projekte

Projekt1: Microarray analysis and simulation of data

Report - R code

Projekt2: Tumor classification by SVM

Report - R code

Übungen

ex12_explain

ex13_true_or_false

ex14_cdna

ex15_gene_evolution

ex16_ecoli

ex17_dna_repair

ex18_cancer_biology

ex20_one_in_a_million

ex21_coin_tosses

ex22_explain

ex23_true_or_false

ex24_nmr_spectra

Images (tar.gz) - Text

ex25_mens_forearms

ex26_explain

ex29_hierarchical_clustering

R code - Matrix

ex31_explain

ex32_true_or_false

ex33_clustering_with_kmeans

ex34_clustering_with_pam

ex35_more_trees

ex36_flowers

ex37_tickets

ex38_recap

ex52_testing_in_r

ex53_explain

ex54_true_or_false

ex55_one_dimensional_classification

ex58_svm_with_linear_kernel

ex60_lda

ex61_lda_vs_dlda

ex63_pam

ex64_geography

ex67_explain

ex68_gene_set_size

Formula - Wolfram-Alpha page

ex70_tree_traversal

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